Database provided for metid

Xiaotao Shen PhD (https://www.shenxt.info/)

Created on 2020-03-28 and updated on 2022-01-07

Source: vignettes/public_databases.Rmd

In-house MS2 databases from Michael Snyder lab

1. Michael Snyder HILIC databases

  • Professor Michael Snyder’s lab. More than 1,000 metabolites.

  • Download here

2. Michael Snyder RPLC databases

  • Professor Michael Snyder’s lab. More than 1,000 metabolites.

  • Download here

Public MS2 databases

1. HMDB database

2. MassBank database

3. MoNA database

4. Orbitrap database

5. Fiehn HILIC database

If you need this database, please contact .

Public MS1 databases

1. HMDB MS1 database

2. KEGG MS1 database

3. Drugbank database

4. T3DB database

5. Blood exposome database

Session information 

sessionInfo()
#> R version 4.1.0 (2021-05-18)
#> Platform: x86_64-apple-darwin17.0 (64-bit)
#> Running under: macOS Big Sur 10.16
#> 
#> Matrix products: default
#> BLAS:   /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRblas.dylib
#> LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
#> 
#> locale:
#> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
#> 
#> attached base packages:
#> [1] stats     graphics  grDevices utils     datasets  methods   base     
#> 
#> loaded via a namespace (and not attached):
#>  [1] rprojroot_2.0.2   digest_0.6.27     crayon_1.4.1      R6_2.5.0         
#>  [5] jsonlite_1.7.2    magrittr_2.0.1    evaluate_0.14     stringi_1.7.3    
#>  [9] rlang_0.4.11      cachem_1.0.5      fs_1.5.0          jquerylib_0.1.4  
#> [13] bslib_0.3.1       ragg_1.1.3        rmarkdown_2.9     pkgdown_2.0.1    
#> [17] textshaping_0.3.6 desc_1.3.0        tools_4.1.0       stringr_1.4.0    
#> [21] purrr_0.3.4       yaml_2.2.1        xfun_0.24         fastmap_1.1.0    
#> [25] compiler_4.1.0    systemfonts_1.0.2 memoise_2.0.0     htmltools_0.5.2  
#> [29] knitr_1.33        sass_0.4.0