Install metid

Xiaotao Shen (https://www.shenxt.info/)

Created on 2021-12-26 and updated on 2022-09-19

Source: vignettes/install.Rmd

Install metid from GitLab

You can just use the remotes to install metid.

remotes::install_gitlab("tidymass/metid", dependencies = TRUE)

Install metid from GitHub

You can just use the remotes to install metid.

remotes::install_github("tidymass/metid", dependencies = TRUE)

In the installation, it will ask if you want to update some packages for few times, just press enter key to skip it.

If there is a error like below:

Error: Failed to install 'metid' from GitHub: HTTP error 403. API rate limit exceeded for 171.66.10.237. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)

Try to resolve it by:

  1. In you R console, type this code:

It will open a page in browser, and create a “New personal access token” and copy it.

  1. Then type this code:
usethis::edit_r_environ()

and then add one line like below:

GITHUB_PAT=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

The GITHUB_PAT should be yours that is created in step 1.

And then restart R session and try again.

Frequently Asked Questions

  1. Can not install dependent packages raster and Cario

raster is a package in CRAN, try to install it first and then install metid.

Cario is a package in CRAN, try to install it first and then install metid.

Session information 

sessionInfo()
#> R version 4.2.1 (2022-06-23)
#> Platform: x86_64-apple-darwin17.0 (64-bit)
#> Running under: macOS Big Sur ... 10.16
#> 
#> Matrix products: default
#> BLAS:   /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib
#> LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
#> 
#> locale:
#> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
#> 
#> attached base packages:
#> [1] stats     graphics  grDevices utils     datasets  methods   base     
#> 
#> loaded via a namespace (and not attached):
#>  [1] rprojroot_2.0.3   digest_0.6.29     R6_2.5.1          jsonlite_1.8.0   
#>  [5] magrittr_2.0.3    evaluate_0.15     stringi_1.7.6     rlang_1.0.3      
#>  [9] cachem_1.0.6      cli_3.3.0         rstudioapi_0.13   fs_1.5.2         
#> [13] jquerylib_0.1.4   bslib_0.3.1       ragg_1.2.2        rmarkdown_2.14   
#> [17] pkgdown_2.0.5     textshaping_0.3.6 desc_1.4.1        tools_4.2.1      
#> [21] stringr_1.4.0     purrr_0.3.4       yaml_2.3.5        xfun_0.31        
#> [25] fastmap_1.1.0     compiler_4.2.1    systemfonts_1.0.4 memoise_2.0.1    
#> [29] htmltools_0.5.2   knitr_1.39        sass_0.4.1