metid
is a R package which is used for metabolite identification based on in-house database and public database based on accurate mass (m/z), retention time (RT) and/or MS2 spectra.
You can install metid
from GitLab
if(!require(remotes)){
install.packages("remotes")
}
remotes::install_gitlab("tidymass/metid")
or Github
remotes::install_github("tidymass/metid")
metid
is a part of tidymass
, so you can also install it by installing tidymass
.
Please see the Help documents
page to get the instruction of metid
.
If you have any questions about metid
, please don’t hesitate to email me (shenxt@stanford.edu).
If you use metid
in your publications, please cite this paper:
Xiaotao Shen, Si Wu, Liang Liang, Songjie Chen, Kevin Contrepois, Zheng-Jiang Zhu*, Michael Snyder* (Corresponding Author). metID: A R package for automatable compound annotation for LC−MS-based data. Bioinformatics, btab583, https://doi.org/10.1093/bioinformatics/btab583
Shen, X., Yan, H., Wang, C. et al. TidyMass an object-oriented reproducible analysis framework for LC–MS data. Nat Commun 13, 4365 (2022). Weblink
Thanks very much!